Curated Sample Data


Genome
hg19
Antigen Class
Histone
Antigen
H3K4me2
Cell type Class
Blood
Cell type
B-Lymphocytes

Cell type information


MeSH Description
Lymphoid cells concerned with humoral immunity. They are short-lived cells resembling bursa-derived lymphocytes of birds in their production of immunoglobulin upon appropriate stimulation.

Attributes by Original Data Submitter


source_name
Cll cells
diagnosis
CLL
patient number
p6
patient age
81
patient sex
Male
disease level
Binet B
chip ab
H3K4Me2 (abcam ab32356)
activation
IgG
cell type
B cells

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated cells and protein-DNA complexes were isolated with antibody. In-house ChIP-Seq protocol, Libraries were evaluated by Qubit and TapeStation. Sequencing libraries were constructed with barcodes to allow multiplexing of y samples on one lane.

Platform Information


instrument_model
Illumina HiSeq 2500

External Database Query

Logs in read processing pipeline


Number of total reads
16938772
Reads aligned (%)
94.1
Duplicates removed (%)
4.9
Number of peaks
10566 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA