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Install and launch IGV before selecting data to visualize
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: BRD4
wikigenes
PDBj
CellType: C4-2
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX2251225
GSM2350454: BRD4 OE rep2; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
BRD4
Cell type
Cell type Class
Prostate
Cell type
C4-2
Tissue
Prostate
Cell Type
Epithelial
Disease
Prostate Cancer
Attributes by original data submitter
Sample
source_name
Prostate cells
cell line
C4-2
treatment
DMSO
chip antibody
BRD4 (BETHYL,A301-985A100)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP DNAs were extracted as as described previously (PMID: 27068475). Libraries were prepared according to Illumina's instructions accompanying the ChIP-seq Sample Kit.
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
33159369
Reads aligned (%)
192.2
Duplicates removed (%)
1.2
Number of peaks
41669 (qval < 1E-05)
hg38
Number of total reads
33159369
Reads aligned (%)
193.2
Duplicates removed (%)
1.1
Number of peaks
41888 (qval < 1E-05)
Base call quality data from
DBCLS SRA