Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BRD4

Cell type

Cell type Class
Prostate
Cell type
C4-2
Tissue
Prostate
Cell Type
Epithelial
Disease
Prostate Cancer

Attributes by original data submitter

Sample

source_name
Prostate cells
cell line
C4-2
treatment
DMSO
chip antibody
BRD4 (BETHYL,A301-985A100)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP DNAs were extracted as as described previously (PMID: 27068475). Libraries were prepared according to Illumina's instructions accompanying the ChIP-seq Sample Kit.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
23784931
Reads aligned (%)
76.1
Duplicates removed (%)
6.7
Number of peaks
418 (qval < 1E-05)

hg38

Number of total reads
23784931
Reads aligned (%)
76.5
Duplicates removed (%)
6.6
Number of peaks
422 (qval < 1E-05)

Base call quality data from DBCLS SRA