SRX2245727
GSM2345254: SLJQ-Med1-Input; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
mESC
treatment medium
Serum LIF + JQ1
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq libraries were constructed with the NEBNext ChIP-seq library prep kit following the manufacturer’s recommended protocol (New England Biolabs, Ipswich, MA, USA).

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
21149263
Reads aligned (%)
92.2
Duplicates removed (%)
4.2
Number of peaks
729 (qval < 1E-05)

mm9

Number of total reads
21149263
Reads aligned (%)
92.1
Duplicates removed (%)
4.4
Number of peaks
671 (qval < 1E-05)

Base call quality data from DBCLS SRA