Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562 cell line
cell line
K562
tissue
bone marrow
clickable molecule
JQ1–TCO
competitor molecule
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysate were isolated from formaldehybe cross-linked cells and digested with micrococcal nuclease to mononucleosomes, then incubated with the clickable molecule with/without competitor. Chem-precipitation was performed with pre-clicked biotin-tetrazine conjugated beads NEBNext ChIP-seq library prep master mix set

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
44494599
Reads aligned (%)
98.8
Duplicates removed (%)
6.2
Number of peaks
816 (qval < 1E-05)

hg19

Number of total reads
44494599
Reads aligned (%)
98.1
Duplicates removed (%)
7.8
Number of peaks
786 (qval < 1E-05)

Base call quality data from DBCLS SRA