Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CEBPB

Cell type

Cell type Class
Blood
Cell type
MV-4-11
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
MV4;11 cell line
cell line
MV4;11
tissue source
peripheral blood
chip antibody
anti-C/EBPβ (E299, Abcam)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysate were isolated from formaldehybe cross-linked cells and sonicated to release the chromatin, then immunoprecipitated with antibody ThruPLEXTM-FD Prep Kit protocol (Rubicon Genomics)

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
8303540
Reads aligned (%)
83.5
Duplicates removed (%)
5.3
Number of peaks
35114 (qval < 1E-05)

hg38

Number of total reads
8303540
Reads aligned (%)
84.0
Duplicates removed (%)
5.0
Number of peaks
34388 (qval < 1E-05)

Base call quality data from DBCLS SRA