Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CEBPA

Cell type

Cell type Class
Blood
Cell type
MV-4-11
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
MV4;11 cell line
cell line
MV4;11
tissue source
peripheral blood
chip antibody
anti-C/EBPα (EP709Y, Abcam)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysate were isolated from formaldehybe cross-linked cells and sonicated to release the chromatin, then immunoprecipitated with antibody ThruPLEXTM-FD Prep Kit protocol (Rubicon Genomics)

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
9013880
Reads aligned (%)
76.5
Duplicates removed (%)
9.1
Number of peaks
36504 (qval < 1E-05)

hg38

Number of total reads
9013880
Reads aligned (%)
76.9
Duplicates removed (%)
8.8
Number of peaks
35711 (qval < 1E-05)

Base call quality data from DBCLS SRA