Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Kidney
Cell type
Kidney
MeSH Description
Body organ that filters blood for the secretion of URINE and that regulates ion concentrations.

Attributes by original data submitter

Sample

source_name
Kidney
tissue
kidney
developmental stage
Postnatal Day 1 (P1)
chip antibody
Goat IgG (Jackson Immuno 005-000-003)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Protein-DNA complexes were immunoprecipitated using Tfcp2l1 antibody (RnD AF5726) or Goat IgG as control ChiP-Seq Library was prepared using Illumina ChiPSeq Library Preparation Kit according to manufacturer's instructions

Sequencing Platform

instrument_model
Illumina Genome Analyzer

mm10

Number of total reads
279193984
Reads aligned (%)
38.1
Duplicates removed (%)
84.3
Number of peaks
926 (qval < 1E-05)

mm9

Number of total reads
279193984
Reads aligned (%)
38.0
Duplicates removed (%)
84.3
Number of peaks
992 (qval < 1E-05)

Base call quality data from DBCLS SRA