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Install and launch IGV before selecting data to visualize
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For ce11
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For ce10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: sdc-3
wikigenes
PDBj
CellType: Mixed embryo
ATCC
MeSH
RIKEN BRC
SRX2228882
GSM2339629: SDC3 ERC38 MxEmb rep2 ChIP-seq; Caenorhabditis elegans; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
sdc-3
Cell type
Cell type Class
Embryo
Cell type
Mixed embryo
NA
NA
Attributes by original data submitter
Sample
source_name
whole worms
strain
ERC38
developmental stage
mixed embryo
antibody target
SDC-3
antibody antigen
1067-1340aa
matching input
SE365 input ERC38 MxEmb ChIP-seq
Sequenced DNA Library
library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests
Sequencing Platform
instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests
Where can I get the processing logs?
Read processing pipeline
log
ce11
Number of total reads
20627992
Reads aligned (%)
19.4
Duplicates removed (%)
13.6
Number of peaks
572 (qval < 1E-05)
ce10
Number of total reads
20627992
Reads aligned (%)
19.4
Duplicates removed (%)
13.6
Number of peaks
572 (qval < 1E-05)
Base call quality data from
DBCLS SRA