Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
C16A3.4

Cell type

Cell type Class
Larvae
Cell type
L1
NA
NA

Attributes by original data submitter

Sample

source_name
Snyder_C16A3.4_GFP_L1_rep2_CATT
strain
OP345(official name : OP345 genotype : unc119(ed3); wgIs345(C16A3.4::TY1 EGFP FLAG; unc119) outcross : 0 mutagen : None tags : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for bombardment transformation of an unc-119(ed3) strain. The C16A3.4::EGFP fusion protein has broad expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the C16A3.4 transcription factor. made_by : Bob Waterston's lab from UW )
developmental stage
fed L1
genotype
unc119(ed3);wgIs345(C16A3.4::TY1 EGFP FLAG;unc119)
Sex
hermaphrodite

Sequenced DNA Library

library_name
GSM1076652: Snyder_C16A3.4_GFP_L1_rep2_CATT
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

ce11

Number of total reads
6976383
Reads aligned (%)
82.8
Duplicates removed (%)
7.5
Number of peaks
3833 (qval < 1E-05)

ce10

Number of total reads
6976383
Reads aligned (%)
82.8
Duplicates removed (%)
7.5
Number of peaks
3830 (qval < 1E-05)

Base call quality data from DBCLS SRA