Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
aha-1

Cell type

Cell type Class
Larvae
Cell type
L4
NA
NA

Attributes by original data submitter

Sample

source_name
Snyder_AHA-1_GFP_L4_rep1
strain
OP124(official name : OP124 genotype : unc-119(ed3); wgIs124(aha-1::TY1 EGFP FLAG; unc-119) outcross : 3 mutagen : Bombard tags : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The AHA-1::EGFP fusion protein is expressed in the correct aha-1 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the AHA-1 transcription factor. made_by : R. Waterston and S. Kim )
developmental stage
L4
genotype
unc-119(ed3); wgIs124(aha-1::TY1 EGFP FLAG;unc-119)
Sex
hermaphrodite

Sequenced DNA Library

library_name
GSM1076643: Snyder_AHA-1_GFP_L4_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

ce11

Number of total reads
6220459
Reads aligned (%)
23.4
Duplicates removed (%)
12.2
Number of peaks
315 (qval < 1E-05)

ce10

Number of total reads
6220459
Reads aligned (%)
23.4
Duplicates removed (%)
12.2
Number of peaks
314 (qval < 1E-05)

Base call quality data from DBCLS SRA