SRX222275
GSM1076112: NCI H660 + E2 [ERα ChIP-Seq]; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Prostate
Cell type
NCI-H660
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma Small Cell

Attributes by original data submitter

Sample

source_name
NCI H660 cell line
cell line
Prostate cancer cell line
agent
E2
passages
4 to 5
chip antibody
ERα (diagenode, AC-066-100, lot # 001)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
37192796
Reads aligned (%)
48.3
Duplicates removed (%)
27.9
Number of peaks
14537 (qval < 1E-05)

hg19

Number of total reads
37192796
Reads aligned (%)
48.1
Duplicates removed (%)
28.6
Number of peaks
14339 (qval < 1E-05)

Base call quality data from DBCLS SRA