Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Prostate
Cell type
VCaP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
VCaP ERa cell line
cell line
Prostate cancer cell line overexpressing ERa
agent
E2
passages
10 to 12
chip antibody
ERα (diagenode, AC-066-100, lot # 001)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
247782619
Reads aligned (%)
46.4
Duplicates removed (%)
36.7
Number of peaks
3055 (qval < 1E-05)

hg38

Number of total reads
247782619
Reads aligned (%)
48.1
Duplicates removed (%)
35.0
Number of peaks
4089 (qval < 1E-05)

Base call quality data from DBCLS SRA