Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Prostate
Cell type
VCaP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
VCaP cell line
cell line
Prostate cancer cell line
agent
E2
passages
3 to 4
chip antibody
ERα (diagenode, AC-066-100, lot # 001)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
35641982
Reads aligned (%)
24.2
Duplicates removed (%)
32.2
Number of peaks
18452 (qval < 1E-05)

hg38

Number of total reads
35641982
Reads aligned (%)
24.8
Duplicates removed (%)
31.2
Number of peaks
18148 (qval < 1E-05)

Base call quality data from DBCLS SRA