Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
IMR90 human fetal lung fibroblast cells, Rb shRNA, senescent, H3K4me3 ChIP
cell line
IMR90
cell type
human fetal lung fibroblast cell line
shRNA
shRb
growth state
senescent
chip antibody
anti-H3K4me3

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
10807574
Reads aligned (%)
78.5
Duplicates removed (%)
4.6
Number of peaks
13943 (qval < 1E-05)

hg19

Number of total reads
10807574
Reads aligned (%)
77.9
Duplicates removed (%)
5.2
Number of peaks
14095 (qval < 1E-05)

Base call quality data from DBCLS SRA