SRX220829
GSM1074459: Senescent H3K4me3 Rep1+2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
IMR90 human fetal lung fibroblast cells, senescent, H3K4me3 ChIP
cell line
IMR90
cell type
human fetal lung fibroblast cell line
growth state
senescent
chip antibody
anti-H3K4me3

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
4085022
Reads aligned (%)
82.9
Duplicates removed (%)
5.7
Number of peaks
6641 (qval < 1E-05)

hg19

Number of total reads
4085022
Reads aligned (%)
82.1
Duplicates removed (%)
6.2
Number of peaks
6606 (qval < 1E-05)

Base call quality data from DBCLS SRA