SRX220827
GSM1074457: Growing H3K4me3 Rep1+2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
IMR90 human fetal lung fibroblast cells, growing, H3K4me3 ChIP
cell line
IMR90
cell type
human fetal lung fibroblast cell line
growth state
growing
chip antibody
anti-H3K4me3

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
9153944
Reads aligned (%)
81.9
Duplicates removed (%)
4.9
Number of peaks
15065 (qval < 1E-05)

hg19

Number of total reads
9153944
Reads aligned (%)
81.3
Duplicates removed (%)
5.5
Number of peaks
15142 (qval < 1E-05)

Base call quality data from DBCLS SRA