Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ERCC8

Cell type

Cell type Class
Epidermis
Cell type
CS1AN
NA
NA

Attributes by original data submitter

Sample

source_name
CS1AN+CSBwt
cell type
dermal fibroblasts, immortolized
treatments
UV-C, 12 J/m2
chip antibody
CSA (Abcam, ab137033)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and DNA-containing complexes were isolated with antibody. Diagenode MicroPlex Library Preparation kit v2

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg19

Number of total reads
122819051
Reads aligned (%)
34.6
Duplicates removed (%)
38.0
Number of peaks
8260 (qval < 1E-05)

hg38

Number of total reads
122819051
Reads aligned (%)
36.1
Duplicates removed (%)
35.8
Number of peaks
8621 (qval < 1E-05)

Base call quality data from DBCLS SRA