Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PSMB5

Cell type

Cell type Class
Epidermis
Cell type
CS1AN
NA
NA

Attributes by original data submitter

Sample

source_name
CS1AN+CSBwt
cell type
dermal fibroblasts, immortolized
treatments
UV-C, 12 J/m2 + lactacystin 3h
chip antibody
PSMB5 (Santa Cruz, sc-55009)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and DNA-containing complexes were isolated with antibody. Diagenode MicroPlex Library Preparation kit v2

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg19

Number of total reads
60640083
Reads aligned (%)
10.1
Duplicates removed (%)
89.1
Number of peaks
1322 (qval < 1E-05)

hg38

Number of total reads
60640083
Reads aligned (%)
10.8
Duplicates removed (%)
88.3
Number of peaks
1194 (qval < 1E-05)

Base call quality data from DBCLS SRA