Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PSMD1

Cell type

Cell type Class
Epidermis
Cell type
CS1AN
NA
NA

Attributes by original data submitter

Sample

source_name
CS1AN+CSBwt
cell type
dermal fibroblasts, immortolized
treatments
UV-C, 12 J/m2 + lactacystin 3h
chip antibody
PSMD-1 (Abcam, ab140682)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and DNA-containing complexes were isolated with antibody. Diagenode MicroPlex Library Preparation kit v2

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg19

Number of total reads
165616640
Reads aligned (%)
70.2
Duplicates removed (%)
28.0
Number of peaks
2462 (qval < 1E-05)

hg38

Number of total reads
165616640
Reads aligned (%)
72.5
Duplicates removed (%)
26.2
Number of peaks
3258 (qval < 1E-05)

Base call quality data from DBCLS SRA