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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: PSMD1
wikigenes
PDBj
CellType: CS1AN
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX2207927
GSM2333824: PSMD1 8h; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
PSMD1
Cell type
Cell type Class
Epidermis
Cell type
CS1AN
NA
NA
Attributes by original data submitter
Sample
source_name
CS1AN+CSBwt
cell type
dermal fibroblasts, immortolized
treatments
UV-C, 12 J/m2 + lactacystin 3h
chip antibody
PSMD-1 (Abcam, ab140682)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and DNA-containing complexes were isolated with antibody. Diagenode MicroPlex Library Preparation kit v2
Sequencing Platform
instrument_model
Illumina HiSeq 4000
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
165616640
Reads aligned (%)
70.2
Duplicates removed (%)
28.0
Number of peaks
2462 (qval < 1E-05)
hg38
Number of total reads
165616640
Reads aligned (%)
72.5
Duplicates removed (%)
26.2
Number of peaks
3258 (qval < 1E-05)
Base call quality data from
DBCLS SRA