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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ERCC6
wikigenes
PDBj
CellType: CS1AN
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX2207926
GSM2333823: CSB WT 8h; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
ERCC6
Cell type
Cell type Class
Epidermis
Cell type
CS1AN
NA
NA
Attributes by original data submitter
Sample
source_name
CS1AN+CSBwt
cell type
dermal fibroblasts, immortolized
treatments
UV-C, 12 J/m2
chip antibody
CSB (rabbit polyclonal, #3222)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and DNA-containing complexes were isolated with antibody. Diagenode MicroPlex Library Preparation kit v2
Sequencing Platform
instrument_model
Illumina HiSeq 4000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
152575078
Reads aligned (%)
84.5
Duplicates removed (%)
32.3
Number of peaks
5889 (qval < 1E-05)
hg19
Number of total reads
152575078
Reads aligned (%)
83.7
Duplicates removed (%)
34.4
Number of peaks
4955 (qval < 1E-05)
Base call quality data from
DBCLS SRA