SRX2207925
GSM2333822: CSB WT 0h; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ERCC6

Cell type

Cell type Class
Epidermis
Cell type
CS1AN
NA
NA

Attributes by original data submitter

Sample

source_name
CS1AN+CSBwt
cell type
dermal fibroblasts, immortolized
chip antibody
CSB (rabbit polyclonal, #3222)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and DNA-containing complexes were isolated with antibody. Diagenode MicroPlex Library Preparation kit v2

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
95913202
Reads aligned (%)
95.0
Duplicates removed (%)
14.3
Number of peaks
3325 (qval < 1E-05)

hg19

Number of total reads
95913202
Reads aligned (%)
94.0
Duplicates removed (%)
16.6
Number of peaks
2560 (qval < 1E-05)

Base call quality data from DBCLS SRA