SRX2207916
GSM2333813: ATF3 WT 8h; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ATF3

Cell type

Cell type Class
Epidermis
Cell type
CS1AN
NA
NA

Attributes by original data submitter

Sample

source_name
CS1AN+CSBwt
cell type
dermal fibroblasts, immortolized
treatments
UV-C, 12 J/m2
chip antibody
ATF3 (Santa Cruz, sc-188x)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and DNA-containing complexes were isolated with antibody. Diagenode MicroPlex Library Preparation kit v2

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
93645077
Reads aligned (%)
93.2
Duplicates removed (%)
25.3
Number of peaks
33051 (qval < 1E-05)

hg19

Number of total reads
93645077
Reads aligned (%)
92.4
Duplicates removed (%)
27.5
Number of peaks
35756 (qval < 1E-05)

Base call quality data from DBCLS SRA