Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ATF3

Cell type

Cell type Class
Epidermis
Cell type
CS1AN
NA
NA

Attributes by original data submitter

Sample

source_name
CS1AN+CSBwt
cell type
dermal fibroblasts, immortolized
chip antibody
ATF3 (Santa Cruz, sc-188x)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and DNA-containing complexes were isolated with antibody. Diagenode MicroPlex Library Preparation kit v2

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg19

Number of total reads
105251000
Reads aligned (%)
80.6
Duplicates removed (%)
12.3
Number of peaks
2415 (qval < 1E-05)

hg38

Number of total reads
105251000
Reads aligned (%)
83.3
Duplicates removed (%)
10.2
Number of peaks
3048 (qval < 1E-05)

Base call quality data from DBCLS SRA