Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RELA

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
Human umbilical vein endothelial cells (HUVECs)
tissue
Human umbilical vein endothelial cells (HUVECs)
passages
Passage 4
state/ treatment
Confluent, treated with Notch1 siRNA and stimulated with IL-1β
chip antibody
anti-NF-κB/RelA, Santa Cruz Biotechnology sc-372

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
58964508
Reads aligned (%)
67.4
Duplicates removed (%)
31.4
Number of peaks
106660 (qval < 1E-05)

hg38

Number of total reads
58964508
Reads aligned (%)
68.2
Duplicates removed (%)
30.9
Number of peaks
106968 (qval < 1E-05)

Base call quality data from DBCLS SRA