Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pancreas
Cell type
MIN6B1
NA
NA

Attributes by original data submitter

Sample

source_name
Min6 cells
tissue
mouse beta cell line Min6
age
--
genotype
WT
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq: Sonicated chromatin from Min6 cells or EndoC cells was immunoprecipitated with rabbit anti Pax6 (Biolegend) and that of sorted pancreatic beta cells using anti-H3K9Ac antibody. ChIP-Seq: Libraries were prepared according to Illumina's instructions accompanying the DNA Sample Prep Kit.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
28557305
Reads aligned (%)
89.0
Duplicates removed (%)
11.6
Number of peaks
393 (qval < 1E-05)

mm9

Number of total reads
28557305
Reads aligned (%)
88.8
Duplicates removed (%)
11.6
Number of peaks
441 (qval < 1E-05)

Base call quality data from DBCLS SRA