SRX220307
GSM1071829: Ovary shWhite Rep2 PolII Input; Drosophila melanogaster; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Adult
Cell type
Ovary
NA
NA

Attributes by original data submitter

Sample

source_name
ovary shWhite PolII Input
biomaterial_provider
Bloomington Drosophila Stock Center
genotype/variation
shWhite x nos-gal4; control knockdown of a protein irrelevant to the system we studied (White)
tissue
Ovaries

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
5625034
Reads aligned (%)
45.5
Duplicates removed (%)
70.4
Number of peaks
1248 (qval < 1E-05)

dm3

Number of total reads
5625034
Reads aligned (%)
45.7
Duplicates removed (%)
65.6
Number of peaks
894 (qval < 1E-05)

Base call quality data from DBCLS SRA