Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Adult
Cell type
Ovary
NA
NA

Attributes by original data submitter

Sample

source_name
ovary shWhite H3K9me3
biomaterial_provider
Bloomington Drosophila Stock Center
genotype/variation
shWhite x nos-gal4; control knockdown of a protein irrelevant to the system we studied (White)
tissue
Ovaries
chip-seq antibody
Anti-RNA polymerase II CTD repeat YSPTSPS (phospho S) antibody [clone 4H8]
chip-seq antibody vendor
Abcam

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

dm6

Number of total reads
32962425
Reads aligned (%)
92.0
Duplicates removed (%)
28.1
Number of peaks
8680 (qval < 1E-05)

dm3

Number of total reads
32962425
Reads aligned (%)
92.3
Duplicates removed (%)
24.9
Number of peaks
10321 (qval < 1E-05)

Base call quality data from DBCLS SRA