SRX220305
GSM1071827: Ovary shWhite Rep2 Input H3K9me3; Drosophila melanogaster; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Adult
Cell type
Ovary
NA
NA

Attributes by original data submitter

Sample

source_name
ovary shWhite Input H3K9me3
biomaterial_provider
Bloomington Drosophila Stock Center
genotype/variation
shWhite x nos-gal4; control knockdown of a protein irrelevant to the system we studied (White)
tissue
Ovaries

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
24087614
Reads aligned (%)
85.6
Duplicates removed (%)
32.4
Number of peaks
7138 (qval < 1E-05)

dm3

Number of total reads
24087614
Reads aligned (%)
85.9
Duplicates removed (%)
30.4
Number of peaks
5508 (qval < 1E-05)

Base call quality data from DBCLS SRA