SRX220300
GSM1071822: Ovary shWhite Rep1 PolII; Drosophila melanogaster; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Adult
Cell type
Ovary
NA
NA

Attributes by original data submitter

Sample

source_name
ovary shWhite PolII
biomaterial_provider
Bloomington Drosophila Stock Center
genotype/variation
shWhite x nos-gal4; control knockdown of a protein irrelevant to the system we studied (White)
tissue
Ovaries
chip-seq antibody
Anti-RNA polymerase II CTD repeat YSPTSPS (phospho S) antibody [clone 4H8]
chip-seq antibody vendor
Abcam

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
21817500
Reads aligned (%)
92.2
Duplicates removed (%)
39.9
Number of peaks
8757 (qval < 1E-05)

dm3

Number of total reads
21817500
Reads aligned (%)
92.2
Duplicates removed (%)
39.3
Number of peaks
9059 (qval < 1E-05)

Base call quality data from DBCLS SRA