SRX220092
GSM1071293: malignant prostate tumor 3 (M3) [ChIP-exo replicate 2 ]; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
AR

Cell type

Cell type Class
Prostate
Cell type
Prostate cancer
NA
NA

Attributes by original data submitter

Sample

source_name
Prostate cancer patient a
tisssue
malignant prostate tumors
chip antibody
anti-AR (N20) from Santa Cruz Biotechnology (Santa Cruz, CA)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
132995558
Reads aligned (%)
80.7
Duplicates removed (%)
47.9
Number of peaks
5846 (qval < 1E-05)

hg19

Number of total reads
132995558
Reads aligned (%)
79.7
Duplicates removed (%)
48.5
Number of peaks
5113 (qval < 1E-05)

Base call quality data from DBCLS SRA