Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Gug

Cell type

Cell type Class
Cell line
Cell type
S2
Source
Oregon R
Developmental Stage
late embryonic stage

Attributes by original data submitter

Sample

source_name
S2_2xlink Atro ChIP-seq
cell line
S2 cells
chip antibody
Rabbit anti-Atro sera (SG2524)
chip antibody information
raised in rabbit, against Atro (amino acids 121-134)
crosslinker
2mM ethylene glycol bis(succinimidyl succinate) and 1% formaldehyde

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

dm3

Number of total reads
2999817
Reads aligned (%)
73.8
Duplicates removed (%)
1.3
Number of peaks
3505 (qval < 1E-05)

dm6

Number of total reads
2999817
Reads aligned (%)
73.6
Duplicates removed (%)
2.3
Number of peaks
2818 (qval < 1E-05)

Base call quality data from DBCLS SRA