SRX220090
GSM1071291: malignant prostate tumor 2 (M2) [ChIP-exo replicate 2 ]; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
AR

Cell type

Cell type Class
Prostate
Cell type
Prostate cancer
NA
NA

Attributes by original data submitter

Sample

source_name
Prostate cancer patient d
tisssue
malignant prostate tumors
chip antibody
anti-AR (N20) from Santa Cruz Biotechnology (Santa Cruz, CA)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
135286702
Reads aligned (%)
90.4
Duplicates removed (%)
46.1
Number of peaks
2197 (qval < 1E-05)

hg19

Number of total reads
135286702
Reads aligned (%)
89.2
Duplicates removed (%)
46.6
Number of peaks
1747 (qval < 1E-05)

Base call quality data from DBCLS SRA