SRX220065
GSM1071300: INPUT PR PR infected; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
primary HUVECs
cell type
endothelial cells
treatment
PR infected
ChIP
none, input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
20034556
Reads aligned (%)
81.0
Duplicates removed (%)
6.2
Number of peaks
695 (qval < 1E-05)

hg19

Number of total reads
20034556
Reads aligned (%)
79.7
Duplicates removed (%)
6.8
Number of peaks
512 (qval < 1E-05)

Base call quality data from DBCLS SRA