Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
AR

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
LNCaP cells
cell line
LNCaP
cancer
Prostate adenocarcinoma
type
Androgen-sensitive
chip antibody
anti-AR (N20) from Santa Cruz Biotechnology (Santa Cruz, CA)
agent
vehicle, control

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
46205142
Reads aligned (%)
76.2
Duplicates removed (%)
13.1
Number of peaks
1421 (qval < 1E-05)

hg38

Number of total reads
46205142
Reads aligned (%)
78.4
Duplicates removed (%)
11.5
Number of peaks
1326 (qval < 1E-05)

Base call quality data from DBCLS SRA