Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
LARP7

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa cells stably expressing Flag-LARP7
antibody used
M2-Sigma + rabbit anti-mouse
beads
Pansorbin cells

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with specific antibodies. Library prepared using Illumina's TruSeq ChIP Library Preparation Kit and following the instructions of the fabricant

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
32181248
Reads aligned (%)
130.9
Duplicates removed (%)
24.8
Number of peaks
3097 (qval < 1E-05)

hg38

Number of total reads
32181248
Reads aligned (%)
131.9
Duplicates removed (%)
24.6
Number of peaks
3162 (qval < 1E-05)

Base call quality data from DBCLS SRA