Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
EP300

Cell type

Cell type Class
Breast
Cell type
SUM 159PT
Primary Tissue
Breast
Tissue Diagnosis
Anaplastic Carcinoma

Attributes by original data submitter

Sample

source_name
SUM159 breast carcinoma cell line
cell line
SUM159 breast carcinoma cell line
treatment
DMSO
time
24h
chip antibody
p300 Santa Cruz Biotechnology sc-585X

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
45469212
Reads aligned (%)
90.3
Duplicates removed (%)
5.3
Number of peaks
7527 (qval < 1E-05)

hg38

Number of total reads
45469212
Reads aligned (%)
91.7
Duplicates removed (%)
4.4
Number of peaks
7666 (qval < 1E-05)

Base call quality data from DBCLS SRA