SRX219373
GSM1070125: MM1S CTCF; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
MM.1S
Primary Tissue
Blood
Tissue Diagnosis
Multiple Myeloma

Attributes by original data submitter

Sample

source_name
Multiple myeloma
chip antibody
CTCF
chip antibody catalog number
Upstate 07-729
chip antibody manufacturer
Upstate 07-729
cell line
MM1.S
barcode removed
ATCACG

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
44691234
Reads aligned (%)
71.8
Duplicates removed (%)
45.5
Number of peaks
50327 (qval < 1E-05)

hg19

Number of total reads
44691234
Reads aligned (%)
71.5
Duplicates removed (%)
45.8
Number of peaks
50067 (qval < 1E-05)

Base call quality data from DBCLS SRA