SRX218291
GSM1066047: resting CTCF CHIP-seq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ctcf

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD43- B cells extracted from spleen
strain
C57BL/6
chip antibody
CTCF (Millipore ref: 07-729 lot: DAM1772428)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
32320923
Reads aligned (%)
84.2
Duplicates removed (%)
20.7
Number of peaks
15707 (qval < 1E-05)

mm9

Number of total reads
32320923
Reads aligned (%)
84.0
Duplicates removed (%)
20.8
Number of peaks
15703 (qval < 1E-05)

Base call quality data from DBCLS SRA