SRX218289
GSM1066045: resting Smc3 CHIP-seq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Smc3

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD43- B cells extracted from spleen
strain
C57BL/6
chip antibody
Smc3 (Abcam ref: ab9263 lot: GR81379-1)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
97017345
Reads aligned (%)
98.1
Duplicates removed (%)
21.0
Number of peaks
4914 (qval < 1E-05)

mm9

Number of total reads
97017345
Reads aligned (%)
97.8
Duplicates removed (%)
20.9
Number of peaks
2444 (qval < 1E-05)

Base call quality data from DBCLS SRA