SRX218288
GSM1066044: resting Smc1 CHIP-seq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Smc1a

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD43- B cells extracted from spleen
strain
C57BL/6
chip antibody
Smc1 (Bethyl ref: A300-055A lot: A300-055A-3)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
47661405
Reads aligned (%)
79.0
Duplicates removed (%)
15.3
Number of peaks
716 (qval < 1E-05)

mm9

Number of total reads
47661405
Reads aligned (%)
78.8
Duplicates removed (%)
15.3
Number of peaks
795 (qval < 1E-05)

Base call quality data from DBCLS SRA