Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ctcf

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD43- B cells extracted from spleen
strain
C57BL/6
chip antibody
CTCF (Millipore ref: 07-729 lot: DAM1772428)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
50172995
Reads aligned (%)
98.2
Duplicates removed (%)
67.4
Number of peaks
2685 (qval < 1E-05)

mm9

Number of total reads
50172995
Reads aligned (%)
97.9
Duplicates removed (%)
67.5
Number of peaks
2475 (qval < 1E-05)

Base call quality data from DBCLS SRA