SRX218284
GSM1066040: stimulated Smc1 CHIP-seq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Smc1a

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD43- B cells extracted from spleen
strain
C57BL/6
chip antibody
Smc1 (Bethyl ref: A300-055A lot: A300-055A-3)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
39052296
Reads aligned (%)
84.9
Duplicates removed (%)
19.9
Number of peaks
5911 (qval < 1E-05)

mm9

Number of total reads
39052296
Reads aligned (%)
84.7
Duplicates removed (%)
19.9
Number of peaks
5832 (qval < 1E-05)

Base call quality data from DBCLS SRA