SRX218229
GSM1065723: IgG heat-treated mitotic K562; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562 cells
cell line
K562 cells
cell cycle phase
arrested to mitosis
treatment
30 min at 42C
chip antibody
IgG (sc-2027, Santa Cruz, Lot#A2412)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
24466211
Reads aligned (%)
95.7
Duplicates removed (%)
35.9
Number of peaks
686 (qval < 1E-05)

hg19

Number of total reads
24466211
Reads aligned (%)
94.9
Duplicates removed (%)
37.7
Number of peaks
980 (qval < 1E-05)

Base call quality data from DBCLS SRA