Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HSF2

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562 cells
cell line
K562 cells
cell cycle phase
arrested to mitosis
treatment
30 min at 42C
chip antibody
HSF2 (Östling et al., 2007, J. Biol. Chem., 282: 7077-7086)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
32468095
Reads aligned (%)
76.3
Duplicates removed (%)
20.8
Number of peaks
1238 (qval < 1E-05)

hg38

Number of total reads
32468095
Reads aligned (%)
78.8
Duplicates removed (%)
19.0
Number of peaks
967 (qval < 1E-05)

Base call quality data from DBCLS SRA