SRX218218
GSM1065712: HSF2 non-treated cycling K562; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HSF2

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562 cells
cell line
K562 cells
cell cycle phase
freely cycling
treatment
no treatment
chip antibody
HSF2 (Östling et al., 2007, J. Biol. Chem., 282: 7077-7086)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
38117775
Reads aligned (%)
98.6
Duplicates removed (%)
21.0
Number of peaks
1106 (qval < 1E-05)

hg19

Number of total reads
38117775
Reads aligned (%)
97.7
Duplicates removed (%)
23.0
Number of peaks
1341 (qval < 1E-05)

Base call quality data from DBCLS SRA