Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
Brain
MeSH Description
The part of CENTRAL NERVOUS SYSTEM that is contained within the skull (CRANIUM). Arising from the NEURAL TUBE, the embryonic brain is comprised of three major parts including PROSENCEPHALON (the forebrain); MESENCEPHALON (the midbrain); and RHOMBENCEPHALON (the hindbrain). The developed brain consists of CEREBRUM; CEREBELLUM; and other structures in the BRAIN STEM.

Attributes by original data submitter

Sample

source_name
Input_ChIRP-seq
strain
C57BL/6J
genotype/variation
wild type
age
adult
tissue
brain
oligo set
N/A

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
34712196
Reads aligned (%)
75.6
Duplicates removed (%)
13.5
Number of peaks
503 (qval < 1E-05)

mm9

Number of total reads
34712196
Reads aligned (%)
75.5
Duplicates removed (%)
13.6
Number of peaks
478 (qval < 1E-05)

Base call quality data from DBCLS SRA