SRX217739
GSM1065009: H3K4me3 ChIPSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Digestive tract
Cell type
HCT 116
Primary Tissue
Colon
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
HCT116 cells
cell type
colorectal carcinoma
passages
15-18
cell line
HCT116 cells
chip antibody
H3K4me3 (Abcam, ab8580, Lot DAM1623866)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
23098461
Reads aligned (%)
99.3
Duplicates removed (%)
38.2
Number of peaks
25621 (qval < 1E-05)

hg19

Number of total reads
23098461
Reads aligned (%)
99.1
Duplicates removed (%)
38.4
Number of peaks
25563 (qval < 1E-05)

Base call quality data from DBCLS SRA