Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
HCT 116
Primary Tissue
Colon
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
HCT116 cells
cell type
colorectal carcinoma
passages
15-18
cell line
HCT116 cells
chip antibody
None

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
24924948
Reads aligned (%)
98.5
Duplicates removed (%)
2.9
Number of peaks
1438 (qval < 1E-05)

hg19

Number of total reads
24924948
Reads aligned (%)
97.8
Duplicates removed (%)
3.9
Number of peaks
1559 (qval < 1E-05)

Base call quality data from DBCLS SRA