SRX217735
GSM1064943: Vehicle Chipseq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Neural
Cell type
Cortical neuron
NA
NA

Attributes by original data submitter

Sample

source_name
cultured cortical neurons
strain
C57BL6
age
10 days in vitro
cell type
cultured cortical neurons
agent
Vehicle
antibody
Anti-PolII N20 (Santa Cruz, sc-899)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
11704057
Reads aligned (%)
69.2
Duplicates removed (%)
23.3
Number of peaks
87681 (qval < 1E-05)

mm9

Number of total reads
11704057
Reads aligned (%)
69.0
Duplicates removed (%)
23.6
Number of peaks
87949 (qval < 1E-05)

Base call quality data from DBCLS SRA